GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_C9976C296 Traes_4DL_C9976C296	ta_iwgsc_4dl_v3_14465990	514	3691	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_C9976C296.2 Traes_4DL_C9976C296.2 PAC:31875588	High	No	432		Get ORF Coding potential... Type: noncoding Potential: -0.262 Folding energies... MFEI: -40.324 AMFE: -0.680 GC content %: 59.259
Taestivum_Traes_4DL_C9976C296.3 Traes_4DL_C9976C296.3 PAC:31875590	Low	Yes	455		Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -37.692 AMFE: -0.692 GC content %: 54.505
Taestivum_Traes_4DL_C9976C296.4 Traes_4DL_C9976C296.4 PAC:31875591	High	No	611		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -30.327 AMFE: -0.639 GC content %: 47.463
Taestivum_Traes_4DL_C9976C296.5 Traes_4DL_C9976C296.5 PAC:31875587	High	No	825		Get ORF Coding potential... Type: noncoding Potential: -0.416 Folding energies... MFEI: -34.036 AMFE: -0.650 GC content %: 52.364

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).