GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_DFEE153B4 Traes_4DL_DFEE153B4	ta_iwgsc_4dl_v3_14333054	197	1387	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_DFEE153B4.1 Traes_4DL_DFEE153B4.1 PAC:31833843	High	No	504		Get ORF Coding potential... Type: noncoding Potential: -0.453 Folding energies... MFEI: -26.131 AMFE: -0.553 GC content %: 47.222
Taestivum_Traes_4DL_DFEE153B4.2 Traes_4DL_DFEE153B4.2 PAC:31833844	High	No	439		Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -27.380 AMFE: -0.544 GC content %: 50.342
Taestivum_Traes_4DL_DFEE153B4.3 Traes_4DL_DFEE153B4.3 PAC:31833845	High	No	1142		Get ORF Coding potential... Type: noncoding Potential: -0.519 Folding energies... MFEI: -25.499 AMFE: -0.610 GC content %: 41.769

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).