GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DS_0A0EE806A Traes_4DS_0A0EE806A	ta_iwgsc_4ds_v1_2277857	11106	16332	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DS_0A0EE806A.1 Traes_4DS_0A0EE806A.1 PAC:31787093	High	No	1077		Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -32.488 AMFE: -0.694 GC content %: 46.797
Taestivum_Traes_4DS_0A0EE806A.5 Traes_4DS_0A0EE806A.5 PAC:31787094	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -26.215 AMFE: -0.625 GC content %: 41.944

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).