Gene
Taestivum Traes 4DS 20C59E523
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4DS_20C59E523 Traes_4DS_20C59E523 |
ta_iwgsc_4ds_v1_2313979 | 4727 | 11495 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4DS_20C59E523.1 Traes_4DS_20C59E523.1 PAC:31953544 |
Low | No | 2254 | Get ORF Coding potential... Type: noncoding Potential: -0.237 Folding energies... MFEI: -31.815 AMFE: -0.674 GC content %: 47.205 | |
| Taestivum_Traes_4DS_20C59E523.10 Traes_4DS_20C59E523.10 PAC:31953550 |
High | No | 1519 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -33.113 AMFE: -0.702 GC content %: 47.136 | |
| Taestivum_Traes_4DS_20C59E523.2 Traes_4DS_20C59E523.2 PAC:31953541 |
High | No | 1380 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -33.094 AMFE: -0.620 GC content %: 53.406 | |
| Taestivum_Traes_4DS_20C59E523.3 Traes_4DS_20C59E523.3 PAC:31953543 |
High | No | 1521 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -32.669 AMFE: -0.617 GC content %: 52.926 | |
| Taestivum_Traes_4DS_20C59E523.4 Traes_4DS_20C59E523.4 PAC:31953546 |
Low | No | 1941 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -32.421 AMFE: -0.675 GC content %: 48.016 | |
| Taestivum_Traes_4DS_20C59E523.5 Traes_4DS_20C59E523.5 PAC:31953545 |
Low | No | 1936 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -32.505 AMFE: -0.676 GC content %: 48.089 | |
| Taestivum_Traes_4DS_20C59E523.6 Traes_4DS_20C59E523.6 PAC:31953547 |
High | No | 1037 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -34.388 AMFE: -0.659 GC content %: 52.170 | |
| Taestivum_Traes_4DS_20C59E523.7 Traes_4DS_20C59E523.7 PAC:31953548 |
High | No | 1059 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -34.070 AMFE: -0.667 GC content %: 51.086 | |
| Taestivum_Traes_4DS_20C59E523.8 Traes_4DS_20C59E523.8 PAC:31953549 |
Low | No | 1178 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -30.874 AMFE: -0.645 GC content %: 47.878 | |
| Taestivum_Traes_4DS_20C59E523.9 Traes_4DS_20C59E523.9 PAC:31953542 |
High | No | 969 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -26.883 AMFE: -0.518 GC content %: 51.909 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_4DS_20C59E523.5 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm3_TM | |
| Taestivum_Traes_4DS_20C59E523.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm3_TM | |
| Taestivum_Traes_4DS_20C59E523.4 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm3_TM |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
