Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_4DS_28E6C4F21 Traes_4DS_28E6C4F21 |
ta_iwgsc_4ds_v1_2324227 | 13216 | 17022 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_4DS_28E6C4F21.1 Traes_4DS_28E6C4F21.1 PAC:31737458 |
High | No | 334 | Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -40.659 AMFE: -0.578 GC content %: 70.359 | |
Taestivum_Traes_4DS_28E6C4F21.2 Traes_4DS_28E6C4F21.2 PAC:31737457 |
Low | No | 1454 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -26.032 AMFE: -0.618 GC content %: 42.091 | |
Taestivum_Traes_4DS_28E6C4F21.3 Traes_4DS_28E6C4F21.3 PAC:31737455 |
Low | No | 1461 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -26.071 AMFE: -0.619 GC content %: 42.094 | |
Taestivum_Traes_4DS_28E6C4F21.4 Traes_4DS_28E6C4F21.4 PAC:31737456 |
Low | No | 1098 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -31.047 AMFE: -0.654 GC content %: 47.450 | |
Taestivum_Traes_4DS_28E6C4F21.5 Traes_4DS_28E6C4F21.5 PAC:31737459 |
Low | No | 1536 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -29.889 AMFE: -0.623 GC content %: 47.982 | |
Taestivum_Traes_4DS_28E6C4F21.6 Traes_4DS_28E6C4F21.6 PAC:31737460 |
Low | No | 1433 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -30.258 AMFE: -0.624 GC content %: 48.500 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_4DS_28E6C4F21.5 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
Taestivum_Traes_4DS_28E6C4F21.6 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
Taestivum_Traes_4DS_28E6C4F21.2 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
Taestivum_Traes_4DS_28E6C4F21.3 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
Taestivum_Traes_4DS_28E6C4F21.4 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA |