GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DS_3E4748773 Traes_4DS_3E4748773	ta_iwgsc_4ds_v1_2276484	5038	8946	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DS_3E4748773.7 Traes_4DS_3E4748773.7 PAC:31755423	High	No	1080		Get ORF Coding potential... Type: noncoding Potential: -0.468 Folding energies... MFEI: -30.676 AMFE: -0.660 GC content %: 46.481
Taestivum_Traes_4DS_3E4748773.8 Traes_4DS_3E4748773.8 PAC:31755424	High	No	415		Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -20.458 AMFE: -0.586 GC content %: 34.940
Taestivum_Traes_4DS_3E4748773.9 Traes_4DS_3E4748773.9 PAC:31755425	High	No	287		Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -19.338 AMFE: -0.610 GC content %: 31.707

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).