Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_4DS_69308E608 Traes_4DS_69308E608 |
ta_iwgsc_4ds_v1_2300319 | 4329 | 8984 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_4DS_69308E608.31 Traes_4DS_69308E608.31 PAC:32014064 |
Low | No | 1918 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -27.445 AMFE: -0.694 GC content %: 39.520 | |
Taestivum_Traes_4DS_69308E608.33 Traes_4DS_69308E608.33 PAC:32014065 |
Low | No | 2821 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -26.881 AMFE: -0.676 GC content %: 39.738 | |
Taestivum_Traes_4DS_69308E608.34 Traes_4DS_69308E608.34 PAC:32014066 |
Low | No | 2773 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -26.715 AMFE: -0.667 GC content %: 40.065 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_4DS_69308E608.31 | RepBase (RepeatMasker) | 2014-01-31 | REP1_SB | |
Taestivum_Traes_4DS_69308E608.33 | RepBase (RepeatMasker) | 2014-01-31 | Copia-106_SB-LTR | |
Taestivum_Traes_4DS_69308E608.34 | RepBase (RepeatMasker) | 2014-01-31 | Copia-106_SB-LTR |