GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DS_6C776B1FC Traes_4DS_6C776B1FC	ta_iwgsc_4ds_v1_2280907	3215	10432	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DS_6C776B1FC.4 Traes_4DS_6C776B1FC.4 PAC:31873067	Low	No	815		Get ORF Coding potential... Type: noncoding Potential: -0.516 Folding energies... MFEI: -31.227 AMFE: -0.618 GC content %: 50.552
Taestivum_Traes_4DS_6C776B1FC.5 Traes_4DS_6C776B1FC.5 PAC:31873068	Low	No	270		Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -37.926 AMFE: -0.602 GC content %: 62.963

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).