Gene
Taestivum Traes 4DS 6FAE1CEB5
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4DS_6FAE1CEB5 Traes_4DS_6FAE1CEB5 |
ta_iwgsc_4ds_v1_2324752 | 3493 | 6195 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4DS_6FAE1CEB5.10 Traes_4DS_6FAE1CEB5.10 PAC:31784592 |
High | No | 2183 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -25.048 AMFE: -0.659 GC content %: 38.021 | |
| Taestivum_Traes_4DS_6FAE1CEB5.11 Traes_4DS_6FAE1CEB5.11 PAC:31784593 |
High | No | 1782 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -25.140 AMFE: -0.646 GC content %: 38.889 | |
| Taestivum_Traes_4DS_6FAE1CEB5.12 Traes_4DS_6FAE1CEB5.12 PAC:31784589 |
High | No | 2171 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -25.251 AMFE: -0.662 GC content %: 38.139 | |
| Taestivum_Traes_4DS_6FAE1CEB5.13 Traes_4DS_6FAE1CEB5.13 PAC:31784588 |
High | No | 1830 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -24.820 AMFE: -0.627 GC content %: 39.563 | |
| Taestivum_Traes_4DS_6FAE1CEB5.14 Traes_4DS_6FAE1CEB5.14 PAC:31784587 |
High | No | 1151 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -24.926 AMFE: -0.633 GC content %: 39.357 | |
| Taestivum_Traes_4DS_6FAE1CEB5.15 Traes_4DS_6FAE1CEB5.15 PAC:31784590 |
High | No | 1742 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -24.374 AMFE: -0.645 GC content %: 37.773 | |
| Taestivum_Traes_4DS_6FAE1CEB5.16 Traes_4DS_6FAE1CEB5.16 PAC:31784596 |
High | No | 1546 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -25.220 AMFE: -0.643 GC content %: 39.198 | |
| Taestivum_Traes_4DS_6FAE1CEB5.17 Traes_4DS_6FAE1CEB5.17 PAC:31784595 |
High | No | 1596 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -24.693 AMFE: -0.638 GC content %: 38.722 | |
| Taestivum_Traes_4DS_6FAE1CEB5.18 Traes_4DS_6FAE1CEB5.18 PAC:31784594 |
High | No | 2081 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -25.300 AMFE: -0.672 GC content %: 37.626 | |
| Taestivum_Traes_4DS_6FAE1CEB5.9 Traes_4DS_6FAE1CEB5.9 PAC:31784591 |
High | No | 1378 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -26.147 AMFE: -0.645 GC content %: 40.566 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
