Gene
Taestivum Traes 4DS 8522964BE
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4DS_8522964BE Traes_4DS_8522964BE |
ta_iwgsc_4ds_v1_2308984 | 1367 | 4367 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4DS_8522964BE.1 Traes_4DS_8522964BE.1 PAC:31961614 |
High | No | 2142 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -30.668 AMFE: -0.657 GC content %: 46.685 | |
| Taestivum_Traes_4DS_8522964BE.2 Traes_4DS_8522964BE.2 PAC:31961615 |
High | No | 2203 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -30.799 AMFE: -0.661 GC content %: 46.618 | |
| Taestivum_Traes_4DS_8522964BE.3 Traes_4DS_8522964BE.3 PAC:31961616 |
High | No | 1358 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -28.527 AMFE: -0.725 GC content %: 39.323 | |
| Taestivum_Traes_4DS_8522964BE.4 Traes_4DS_8522964BE.4 PAC:31961618 |
High | No | 1847 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -31.213 AMFE: -0.655 GC content %: 47.645 | |
| Taestivum_Traes_4DS_8522964BE.5 Traes_4DS_8522964BE.5 PAC:31961617 |
High | No | 2156 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -30.654 AMFE: -0.665 GC content %: 46.104 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
