Gene
Taestivum Traes 4DS A800BBB3B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4DS_A800BBB3B Traes_4DS_A800BBB3B |
ta_iwgsc_4ds_v1_1906161 | 1452 | 6109 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4DS_A800BBB3B.1 Traes_4DS_A800BBB3B.1 PAC:31811875 |
Low | No | 2062 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -27.556 AMFE: -0.661 GC content %: 41.659 | |
| Taestivum_Traes_4DS_A800BBB3B.10 Traes_4DS_A800BBB3B.10 PAC:31811873 |
Low | No | 1556 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -29.666 AMFE: -0.646 GC content %: 45.951 | |
| Taestivum_Traes_4DS_A800BBB3B.11 Traes_4DS_A800BBB3B.11 PAC:31811862 |
Low | No | 1665 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -31.255 AMFE: -0.652 GC content %: 47.928 | |
| Taestivum_Traes_4DS_A800BBB3B.12 Traes_4DS_A800BBB3B.12 PAC:31811878 |
Low | No | 1861 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -27.346 AMFE: -0.653 GC content %: 41.859 | |
| Taestivum_Traes_4DS_A800BBB3B.13 Traes_4DS_A800BBB3B.13 PAC:31811870 |
Low | No | 1539 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.356 AMFE: -0.657 GC content %: 43.145 | |
| Taestivum_Traes_4DS_A800BBB3B.14 Traes_4DS_A800BBB3B.14 PAC:31811866 |
Low | No | 2022 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -27.760 AMFE: -0.659 GC content %: 42.136 | |
| Taestivum_Traes_4DS_A800BBB3B.15 Traes_4DS_A800BBB3B.15 PAC:31811874 |
Low | No | 1253 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -28.579 AMFE: -0.637 GC content %: 44.852 | |
| Taestivum_Traes_4DS_A800BBB3B.16 Traes_4DS_A800BBB3B.16 PAC:31811876 |
Low | No | 2206 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -29.497 AMFE: -0.651 GC content %: 45.286 | |
| Taestivum_Traes_4DS_A800BBB3B.17 Traes_4DS_A800BBB3B.17 PAC:31811867 |
Low | No | 1331 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -28.310 AMFE: -0.641 GC content %: 44.177 | |
| Taestivum_Traes_4DS_A800BBB3B.18 Traes_4DS_A800BBB3B.18 PAC:31811865 |
Low | No | 1898 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -27.086 AMFE: -0.652 GC content %: 41.517 | |
| Taestivum_Traes_4DS_A800BBB3B.19 Traes_4DS_A800BBB3B.19 PAC:31811881 |
Low | No | 2348 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -29.067 AMFE: -0.644 GC content %: 45.102 | |
| Taestivum_Traes_4DS_A800BBB3B.2 Traes_4DS_A800BBB3B.2 PAC:31811863 |
Low | No | 1527 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -30.930 AMFE: -0.658 GC content %: 47.020 | |
| Taestivum_Traes_4DS_A800BBB3B.20 Traes_4DS_A800BBB3B.20 PAC:31811880 |
Low | No | 2214 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -29.223 AMFE: -0.652 GC content %: 44.806 | |
| Taestivum_Traes_4DS_A800BBB3B.21 Traes_4DS_A800BBB3B.21 PAC:31811885 |
Low | No | 1524 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -30.958 AMFE: -0.659 GC content %: 46.982 | |
| Taestivum_Traes_4DS_A800BBB3B.22 Traes_4DS_A800BBB3B.22 PAC:31811882 |
Low | No | 1525 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -29.993 AMFE: -0.646 GC content %: 46.426 | |
| Taestivum_Traes_4DS_A800BBB3B.23 Traes_4DS_A800BBB3B.23 PAC:31811883 |
Low | No | 1287 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -28.361 AMFE: -0.647 GC content %: 43.823 | |
| Taestivum_Traes_4DS_A800BBB3B.24 Traes_4DS_A800BBB3B.24 PAC:31811884 |
Low | No | 2211 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -29.218 AMFE: -0.653 GC content %: 44.776 | |
| Taestivum_Traes_4DS_A800BBB3B.25 Traes_4DS_A800BBB3B.25 PAC:31811886 |
Low | No | 1921 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -30.109 AMFE: -0.656 GC content %: 45.914 | |
| Taestivum_Traes_4DS_A800BBB3B.26 Traes_4DS_A800BBB3B.26 PAC:31811888 |
Low | No | 1621 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -30.099 AMFE: -0.646 GC content %: 46.576 | |
| Taestivum_Traes_4DS_A800BBB3B.27 Traes_4DS_A800BBB3B.27 PAC:31811887 |
Low | No | 1536 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -31.680 AMFE: -0.657 GC content %: 48.242 | |
| Taestivum_Traes_4DS_A800BBB3B.28 Traes_4DS_A800BBB3B.28 PAC:31811890 |
Low | No | 1435 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -30.564 AMFE: -0.655 GC content %: 46.690 | |
| Taestivum_Traes_4DS_A800BBB3B.29 Traes_4DS_A800BBB3B.29 PAC:31811889 |
Low | No | 1548 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -30.013 AMFE: -0.667 GC content %: 45.026 | |
| Taestivum_Traes_4DS_A800BBB3B.3 Traes_4DS_A800BBB3B.3 PAC:31811877 |
Low | No | 2140 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -28.799 AMFE: -0.655 GC content %: 43.972 | |
| Taestivum_Traes_4DS_A800BBB3B.30 Traes_4DS_A800BBB3B.30 PAC:31811891 |
Low | No | 1291 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -29.675 AMFE: -0.663 GC content %: 44.771 | |
| Taestivum_Traes_4DS_A800BBB3B.31 Traes_4DS_A800BBB3B.31 PAC:31811892 |
Low | No | 1251 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -28.497 AMFE: -0.646 GC content %: 44.125 | |
| Taestivum_Traes_4DS_A800BBB3B.32 Traes_4DS_A800BBB3B.32 PAC:31811893 |
Low | No | 1870 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -27.390 AMFE: -0.650 GC content %: 42.139 | |
| Taestivum_Traes_4DS_A800BBB3B.33 Traes_4DS_A800BBB3B.33 PAC:31811894 |
Low | No | 1638 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -28.388 AMFE: -0.679 GC content %: 41.819 | |
| Taestivum_Traes_4DS_A800BBB3B.34 Traes_4DS_A800BBB3B.34 PAC:31811896 |
Low | No | 1753 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -30.479 AMFE: -0.673 GC content %: 45.294 | |
| Taestivum_Traes_4DS_A800BBB3B.35 Traes_4DS_A800BBB3B.35 PAC:31811895 |
Low | No | 2394 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -27.744 AMFE: -0.665 GC content %: 41.729 | |
| Taestivum_Traes_4DS_A800BBB3B.36 Traes_4DS_A800BBB3B.36 PAC:31811897 |
Low | No | 1545 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -31.249 AMFE: -0.655 GC content %: 47.702 | |
| Taestivum_Traes_4DS_A800BBB3B.37 Traes_4DS_A800BBB3B.37 PAC:31811898 |
High | No | 1488 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -23.770 AMFE: -0.638 GC content %: 37.231 | |
| Taestivum_Traes_4DS_A800BBB3B.38 Traes_4DS_A800BBB3B.38 PAC:31811899 |
Low | No | 1583 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -30.821 AMFE: -0.651 GC content %: 47.378 | |
| Taestivum_Traes_4DS_A800BBB3B.39 Traes_4DS_A800BBB3B.39 PAC:31811900 |
Low | No | 2106 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -29.558 AMFE: -0.659 GC content %: 44.872 | |
| Taestivum_Traes_4DS_A800BBB3B.4 Traes_4DS_A800BBB3B.4 PAC:31811869 |
Low | No | 1750 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -29.743 AMFE: -0.641 GC content %: 46.400 | |
| Taestivum_Traes_4DS_A800BBB3B.5 Traes_4DS_A800BBB3B.5 PAC:31811879 |
Low | No | 1598 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -30.300 AMFE: -0.655 GC content %: 46.245 | |
| Taestivum_Traes_4DS_A800BBB3B.6 Traes_4DS_A800BBB3B.6 PAC:31811868 |
Low | No | 2028 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -28.752 AMFE: -0.652 GC content %: 44.083 | |
| Taestivum_Traes_4DS_A800BBB3B.7 Traes_4DS_A800BBB3B.7 PAC:31811871 |
Low | No | 1514 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -30.905 AMFE: -0.657 GC content %: 47.028 | |
| Taestivum_Traes_4DS_A800BBB3B.8 Traes_4DS_A800BBB3B.8 PAC:31811872 |
Low | No | 2074 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -28.877 AMFE: -0.658 GC content %: 43.877 | |
| Taestivum_Traes_4DS_A800BBB3B.9 Traes_4DS_A800BBB3B.9 PAC:31811864 |
Low | No | 2079 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -28.571 AMFE: -0.653 GC content %: 43.771 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
