GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DS_CB5AE2007 Traes_4DS_CB5AE2007	ta_iwgsc_4ds_v1_2275341	3754	5437	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DS_CB5AE2007.1 Traes_4DS_CB5AE2007.1 PAC:31878362	High	No	1672		Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -37.268 AMFE: -0.674 GC content %: 55.323
Taestivum_Traes_4DS_CB5AE2007.2 Traes_4DS_CB5AE2007.2 PAC:31878361	High	No	1592		Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -35.730 AMFE: -0.662 GC content %: 53.957

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).