GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DS_DE7B8AD07 Traes_4DS_DE7B8AD07	ta_iwgsc_4ds_v1_2299549	1138	17070	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DS_DE7B8AD07.17 Traes_4DS_DE7B8AD07.17 PAC:31900644	High	No	2146		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -26.314 AMFE: -0.637 GC content %: 41.333
Taestivum_Traes_4DS_DE7B8AD07.18 Traes_4DS_DE7B8AD07.18 PAC:31900645	High	No	712		Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -22.851 AMFE: -0.577 GC content %: 39.607

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).