GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_12DE2E3DC Traes_5AL_12DE2E3DC	ta_iwgsc_5al_v1_2758447	3613	6026	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_12DE2E3DC.1 Traes_5AL_12DE2E3DC.1 PAC:31869655	Low	Yes	223		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -41.300 AMFE: -0.708 GC content %: 58.296
Taestivum_Traes_5AL_12DE2E3DC.2 Traes_5AL_12DE2E3DC.2 PAC:31869653	High	No	508		Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -36.654 AMFE: -0.665 GC content %: 55.118
Taestivum_Traes_5AL_12DE2E3DC.3 Traes_5AL_12DE2E3DC.3 PAC:31869654	High	No	228		Get ORF Coding potential... Type: noncoding Potential: -0.475 Folding energies... MFEI: -37.895 AMFE: -0.650 GC content %: 58.333

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).