GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_13B1C90F0 Traes_5AL_13B1C90F0	ta_iwgsc_5al_v1_2749735	332	2030	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_13B1C90F0.1 Traes_5AL_13B1C90F0.1 PAC:31784912	High	No	1593		Get ORF Coding potential... Type: noncoding Potential: -0.316 Folding energies... MFEI: -28.223 AMFE: -0.616 GC content %: 45.825
Taestivum_Traes_5AL_13B1C90F0.2 Traes_5AL_13B1C90F0.2 PAC:31784913	High	No	1052		Get ORF Coding potential... Type: noncoding Potential: -0.138 Folding energies... MFEI: -28.251 AMFE: -0.610 GC content %: 46.293

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).