GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_13D923D4A Traes_5AL_13D923D4A	ta_iwgsc_5al_v1_2425594	13	1151	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_13D923D4A.1 Traes_5AL_13D923D4A.1 PAC:31968777	High	No	647		Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -29.567 AMFE: -0.598 GC content %: 49.459
Taestivum_Traes_5AL_13D923D4A.2 Traes_5AL_13D923D4A.2 PAC:31968776	High	No	1139		Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -29.254 AMFE: -0.642 GC content %: 45.566

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).