Gene
Taestivum Traes 5AL 17C89F755
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5AL_17C89F755 Traes_5AL_17C89F755 |
ta_iwgsc_5al_v1_1777823 | 3 | 4922 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5AL_17C89F755.1 Traes_5AL_17C89F755.1 PAC:31857464 |
High | No | 1003 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -27.109 AMFE: -0.600 GC content %: 45.165 | |
| Taestivum_Traes_5AL_17C89F755.10 Traes_5AL_17C89F755.10 PAC:31857459 |
Low | No | 3165 | Get ORF Coding potential... Type: noncoding Potential: -0.681 Folding energies... MFEI: -26.521 AMFE: -0.650 GC content %: 40.790 | |
| Taestivum_Traes_5AL_17C89F755.11 Traes_5AL_17C89F755.11 PAC:31857469 |
Low | No | 3249 | Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -26.045 AMFE: -0.655 GC content %: 39.766 | |
| Taestivum_Traes_5AL_17C89F755.12 Traes_5AL_17C89F755.12 PAC:31857461 |
High | No | 2548 | Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -27.822 AMFE: -0.681 GC content %: 40.856 | |
| Taestivum_Traes_5AL_17C89F755.13 Traes_5AL_17C89F755.13 PAC:31857463 |
Low | No | 3935 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -25.901 AMFE: -0.654 GC content %: 39.593 | |
| Taestivum_Traes_5AL_17C89F755.14 Traes_5AL_17C89F755.14 PAC:31857466 |
Low | No | 2522 | Get ORF Coding potential... Type: noncoding Potential: -0.665 Folding energies... MFEI: -26.749 AMFE: -0.639 GC content %: 41.872 | |
| Taestivum_Traes_5AL_17C89F755.15 Traes_5AL_17C89F755.15 PAC:31857465 |
Low | No | 2997 | Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -26.647 AMFE: -0.649 GC content %: 41.074 | |
| Taestivum_Traes_5AL_17C89F755.16 Traes_5AL_17C89F755.16 PAC:31857457 |
Low | No | 2120 | Get ORF Coding potential... Type: noncoding Potential: -0.650 Folding energies... MFEI: -27.882 AMFE: -0.647 GC content %: 43.066 | |
| Taestivum_Traes_5AL_17C89F755.17 Traes_5AL_17C89F755.17 PAC:31857468 |
High | No | 1749 | Get ORF Coding potential... Type: noncoding Potential: -0.632 Folding energies... MFEI: -29.131 AMFE: -0.670 GC content %: 43.453 | |
| Taestivum_Traes_5AL_17C89F755.18 Traes_5AL_17C89F755.18 PAC:31857473 |
High | No | 1711 | Get ORF Coding potential... Type: noncoding Potential: -0.630 Folding energies... MFEI: -29.901 AMFE: -0.677 GC content %: 44.185 | |
| Taestivum_Traes_5AL_17C89F755.19 Traes_5AL_17C89F755.19 PAC:31857480 |
Low | No | 3039 | Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -26.765 AMFE: -0.650 GC content %: 41.165 | |
| Taestivum_Traes_5AL_17C89F755.2 Traes_5AL_17C89F755.2 PAC:31857471 |
High | No | 3258 | Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -26.783 AMFE: -0.659 GC content %: 40.669 | |
| Taestivum_Traes_5AL_17C89F755.20 Traes_5AL_17C89F755.20 PAC:31857495 |
Low | No | 3206 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -26.865 AMFE: -0.652 GC content %: 41.235 | |
| Taestivum_Traes_5AL_17C89F755.21 Traes_5AL_17C89F755.21 PAC:31857490 |
Low | No | 4026 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -26.145 AMFE: -0.657 GC content %: 39.791 | |
| Taestivum_Traes_5AL_17C89F755.22 Traes_5AL_17C89F755.22 PAC:31857474 |
Low | No | 2722 | Get ORF Coding potential... Type: noncoding Potential: -0.749 Folding energies... MFEI: -26.888 AMFE: -0.641 GC content %: 41.918 | |
| Taestivum_Traes_5AL_17C89F755.23 Traes_5AL_17C89F755.23 PAC:31857477 |
Low | No | 3542 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -26.124 AMFE: -0.651 GC content %: 40.119 | |
| Taestivum_Traes_5AL_17C89F755.24 Traes_5AL_17C89F755.24 PAC:31857496 |
Low | No | 3114 | Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -26.708 AMFE: -0.652 GC content %: 40.944 | |
| Taestivum_Traes_5AL_17C89F755.25 Traes_5AL_17C89F755.25 PAC:31857493 |
Low | No | 3943 | Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -26.221 AMFE: -0.662 GC content %: 39.589 | |
| Taestivum_Traes_5AL_17C89F755.26 Traes_5AL_17C89F755.26 PAC:31857491 |
High | No | 1773 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -30.118 AMFE: -0.694 GC content %: 43.373 | |
| Taestivum_Traes_5AL_17C89F755.27 Traes_5AL_17C89F755.27 PAC:31857497 |
Low | No | 3170 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -26.779 AMFE: -0.651 GC content %: 41.136 | |
| Taestivum_Traes_5AL_17C89F755.28 Traes_5AL_17C89F755.28 PAC:31857479 |
Low | No | 3179 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -26.826 AMFE: -0.651 GC content %: 41.208 | |
| Taestivum_Traes_5AL_17C89F755.29 Traes_5AL_17C89F755.29 PAC:31857476 |
Low | No | 3867 | Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -26.137 AMFE: -0.658 GC content %: 39.721 | |
| Taestivum_Traes_5AL_17C89F755.3 Traes_5AL_17C89F755.3 PAC:31857462 |
High | No | 1276 | Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -31.364 AMFE: -0.670 GC content %: 46.787 | |
| Taestivum_Traes_5AL_17C89F755.30 Traes_5AL_17C89F755.30 PAC:31857489 |
Low | No | 2319 | Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -27.956 AMFE: -0.648 GC content %: 43.165 | |
| Taestivum_Traes_5AL_17C89F755.31 Traes_5AL_17C89F755.31 PAC:31857484 |
Low | No | 4037 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -26.230 AMFE: -0.659 GC content %: 39.782 | |
| Taestivum_Traes_5AL_17C89F755.32 Traes_5AL_17C89F755.32 PAC:31857475 |
Low | No | 3405 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -26.053 AMFE: -0.652 GC content %: 39.971 | |
| Taestivum_Traes_5AL_17C89F755.33 Traes_5AL_17C89F755.33 PAC:31857483 |
Low | No | 2675 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -26.770 AMFE: -0.643 GC content %: 41.645 | |
| Taestivum_Traes_5AL_17C89F755.34 Traes_5AL_17C89F755.34 PAC:31857494 |
High | No | 1464 | Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -30.123 AMFE: -0.671 GC content %: 44.877 | |
| Taestivum_Traes_5AL_17C89F755.35 Traes_5AL_17C89F755.35 PAC:31857481 |
High | No | 1783 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -29.181 AMFE: -0.671 GC content %: 43.466 | |
| Taestivum_Traes_5AL_17C89F755.36 Traes_5AL_17C89F755.36 PAC:31857492 |
Low | No | 2664 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -26.911 AMFE: -0.644 GC content %: 41.779 | |
| Taestivum_Traes_5AL_17C89F755.37 Traes_5AL_17C89F755.37 PAC:31857488 |
High | No | 2093 | Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -27.989 AMFE: -0.701 GC content %: 39.943 | |
| Taestivum_Traes_5AL_17C89F755.38 Traes_5AL_17C89F755.38 PAC:31857485 |
Low | No | 3680 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -25.658 AMFE: -0.657 GC content %: 39.076 | |
| Taestivum_Traes_5AL_17C89F755.39 Traes_5AL_17C89F755.39 PAC:31857486 |
Low | No | 3466 | Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -26.220 AMFE: -0.656 GC content %: 39.960 | |
| Taestivum_Traes_5AL_17C89F755.4 Traes_5AL_17C89F755.4 PAC:31857456 |
Low | No | 3460 | Get ORF Coding potential... Type: noncoding Potential: -0.686 Folding energies... MFEI: -26.055 AMFE: -0.649 GC content %: 40.145 | |
| Taestivum_Traes_5AL_17C89F755.40 Traes_5AL_17C89F755.40 PAC:31857482 |
Low | No | 2555 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -26.928 AMFE: -0.643 GC content %: 41.879 | |
| Taestivum_Traes_5AL_17C89F755.41 Traes_5AL_17C89F755.41 PAC:31857487 |
Low | No | 3968 | Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -26.190 AMFE: -0.661 GC content %: 39.617 | |
| Taestivum_Traes_5AL_17C89F755.42 Traes_5AL_17C89F755.42 PAC:31857478 |
Low | No | 2546 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -26.870 AMFE: -0.643 GC content %: 41.791 | |
| Taestivum_Traes_5AL_17C89F755.5 Traes_5AL_17C89F755.5 PAC:31857472 |
Low | No | 3883 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -26.114 AMFE: -0.657 GC content %: 39.763 | |
| Taestivum_Traes_5AL_17C89F755.6 Traes_5AL_17C89F755.6 PAC:31857458 |
High | No | 3436 | Get ORF Coding potential... Type: noncoding Potential: -0.686 Folding energies... MFEI: -26.697 AMFE: -0.662 GC content %: 40.308 | |
| Taestivum_Traes_5AL_17C89F755.7 Traes_5AL_17C89F755.7 PAC:31857460 |
Low | No | 3045 | Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -26.739 AMFE: -0.653 GC content %: 40.952 | |
| Taestivum_Traes_5AL_17C89F755.8 Traes_5AL_17C89F755.8 PAC:31857470 |
High | No | 2641 | Get ORF Coding potential... Type: noncoding Potential: -0.668 Folding energies... MFEI: -27.959 AMFE: -0.685 GC content %: 40.818 | |
| Taestivum_Traes_5AL_17C89F755.9 Traes_5AL_17C89F755.9 PAC:31857467 |
Low | No | 3036 | Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -26.690 AMFE: -0.653 GC content %: 40.876 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_5AL_17C89F755.9 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.27 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.40 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.21 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.14 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.33 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.28 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.41 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.22 | RepBase (RepeatMasker) | 2014-01-31 | Jittery | |
| Taestivum_Traes_5AL_17C89F755.15 | RepBase (RepeatMasker) | 2014-01-31 | Jittery |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
