Gene
Taestivum Traes 5AL 1CEEA74CE
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5AL_1CEEA74CE Traes_5AL_1CEEA74CE |
ta_iwgsc_5al_v1_2791204 | 4 | 1732 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5AL_1CEEA74CE.1 Traes_5AL_1CEEA74CE.1 PAC:31805578 |
High | No | 1566 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -27.612 AMFE: -0.690 GC content %: 40.038 | |
| Taestivum_Traes_5AL_1CEEA74CE.2 Traes_5AL_1CEEA74CE.2 PAC:31805579 |
High | No | 1112 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -28.669 AMFE: -0.681 GC content %: 42.086 | |
| Taestivum_Traes_5AL_1CEEA74CE.3 Traes_5AL_1CEEA74CE.3 PAC:31805581 |
High | No | 1440 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -26.403 AMFE: -0.668 GC content %: 39.514 | |
| Taestivum_Traes_5AL_1CEEA74CE.4 Traes_5AL_1CEEA74CE.4 PAC:31805580 |
High | No | 955 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -27.246 AMFE: -0.660 GC content %: 41.257 | |
| Taestivum_Traes_5AL_1CEEA74CE.5 Traes_5AL_1CEEA74CE.5 PAC:31805582 |
High | No | 1698 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -26.590 AMFE: -0.684 GC content %: 38.869 | |
| Taestivum_Traes_5AL_1CEEA74CE.6 Traes_5AL_1CEEA74CE.6 PAC:31805583 |
High | No | 892 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -27.085 AMFE: -0.677 GC content %: 40.022 | |
| Taestivum_Traes_5AL_1CEEA74CE.7 Traes_5AL_1CEEA74CE.7 PAC:31805584 |
High | No | 694 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -28.646 AMFE: -0.676 GC content %: 42.363 | |
| Taestivum_Traes_5AL_1CEEA74CE.8 Traes_5AL_1CEEA74CE.8 PAC:31805585 |
High | No | 958 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -25.616 AMFE: -0.669 GC content %: 38.309 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
