GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_1F8B14C11 Traes_5AL_1F8B14C11	ta_iwgsc_5al_v1_2764154	892	2902	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_1F8B14C11.2 Traes_5AL_1F8B14C11.2 PAC:31837663	High	No	642		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -30.685 AMFE: -0.670 GC content %: 45.794
Taestivum_Traes_5AL_1F8B14C11.3 Traes_5AL_1F8B14C11.3 PAC:31837664	High	No	736		Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -31.834 AMFE: -0.651 GC content %: 48.913

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).