GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_6DF70F70F Traes_5AL_6DF70F70F	ta_iwgsc_5al_v1_614445	723	2718	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_6DF70F70F.1 Traes_5AL_6DF70F70F.1 PAC:31860889	Low	No	905		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -26.829 AMFE: -0.629 GC content %: 42.652
Taestivum_Traes_5AL_6DF70F70F.2 Traes_5AL_6DF70F70F.2 PAC:31860890	Low	No	611		Get ORF Coding potential... Type: noncoding Potential: -0.823 Folding energies... MFEI: -28.003 AMFE: -0.636 GC content %: 44.026
Taestivum_Traes_5AL_6DF70F70F.3 Traes_5AL_6DF70F70F.3 PAC:31860888	Low	No	309		Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -27.929 AMFE: -0.616 GC content %: 45.307

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).