GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_6F55F4E44 Traes_5AL_6F55F4E44	ta_iwgsc_5al_v1_2805692	2232	11594	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_6F55F4E44.10 Traes_5AL_6F55F4E44.10 PAC:31851974	Low	No	960		Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -30.583 AMFE: -0.661 GC content %: 46.250
Taestivum_Traes_5AL_6F55F4E44.11 Traes_5AL_6F55F4E44.11 PAC:31851975	High	No	849		Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -28.857 AMFE: -0.623 GC content %: 46.290

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).