GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_96EA07253 Traes_5AL_96EA07253	ta_iwgsc_5al_v1_2774757	32	4819	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_96EA07253.4 Traes_5AL_96EA07253.4 PAC:32018907	High	No	782		Get ORF Coding potential... Type: noncoding Potential: -0.635 Folding energies... MFEI: -27.059 AMFE: -0.613 GC content %: 44.118
Taestivum_Traes_5AL_96EA07253.5 Traes_5AL_96EA07253.5 PAC:32018908	High	No	928		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -25.690 AMFE: -0.610 GC content %: 42.134

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).