GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_A197DB08D Traes_5AL_A197DB08D	ta_iwgsc_5al_v1_2669296	1256	3608	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_A197DB08D.1 Traes_5AL_A197DB08D.1 PAC:31853956	High	No	719		Get ORF Coding potential... Type: noncoding Potential: -0.560 Folding energies... MFEI: -29.680 AMFE: -0.711 GC content %: 41.725
Taestivum_Traes_5AL_A197DB08D.2 Traes_5AL_A197DB08D.2 PAC:31853957	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -28.548 AMFE: -0.690 GC content %: 41.349

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).