GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_B4DB58006 Traes_5AL_B4DB58006	ta_iwgsc_5al_v1_2736893	1089	2921	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_B4DB58006.1 Traes_5AL_B4DB58006.1 PAC:31815476	Low	No	727		Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -28.363 AMFE: -0.672 GC content %: 42.228
Taestivum_Traes_5AL_B4DB58006.2 Traes_5AL_B4DB58006.2 PAC:31815477	High	No	891		Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -29.439 AMFE: -0.617 GC content %: 47.699

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).