Gene
Taestivum Traes 5AL C7848DB36
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5AL_C7848DB36 Traes_5AL_C7848DB36 |
ta_iwgsc_5al_v1_2743755 | 9390 | 15980 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5AL_C7848DB36.1 Traes_5AL_C7848DB36.1 PAC:31975035 |
Low | No | 425 | Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -33.765 AMFE: -0.646 GC content %: 52.235 | |
| Taestivum_Traes_5AL_C7848DB36.10 Traes_5AL_C7848DB36.10 PAC:31975032 |
Low | No | 1382 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -29.153 AMFE: -0.652 GC content %: 44.718 | |
| Taestivum_Traes_5AL_C7848DB36.15 Traes_5AL_C7848DB36.15 PAC:31975037 |
High | No | 1795 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -25.504 AMFE: -0.629 GC content %: 40.557 | |
| Taestivum_Traes_5AL_C7848DB36.17 Traes_5AL_C7848DB36.17 PAC:31975036 |
High | No | 347 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -27.896 AMFE: -0.583 GC content %: 47.839 | |
| Taestivum_Traes_5AL_C7848DB36.9 Traes_5AL_C7848DB36.9 PAC:31975028 |
Low | No | 1770 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -28.881 AMFE: -0.666 GC content %: 43.333 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
