GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_DE2FD1245 Traes_5AL_DE2FD1245	ta_iwgsc_5al_v1_2784284	9910	11245	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_DE2FD1245.1 Traes_5AL_DE2FD1245.1 PAC:31860072	High	No	1315		Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -29.209 AMFE: -0.683 GC content %: 42.738
Taestivum_Traes_5AL_DE2FD1245.2 Traes_5AL_DE2FD1245.2 PAC:31860073	High	No	408		Get ORF Coding potential... Type: noncoding Potential: -0.577 Folding energies... MFEI: -31.520 AMFE: -0.670 GC content %: 47.059

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).