GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_F9D74ADB1 Traes_5AL_F9D74ADB1	ta_iwgsc_5al_v1_2740211	459	2122	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_F9D74ADB1.1 Traes_5AL_F9D74ADB1.1 PAC:31895030	High	No	722		Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -31.247 AMFE: -0.648 GC content %: 48.199
Taestivum_Traes_5AL_F9D74ADB1.2 Traes_5AL_F9D74ADB1.2 PAC:31895028	High	No	562		Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -31.281 AMFE: -0.626 GC content %: 50.000
Taestivum_Traes_5AL_F9D74ADB1.3 Traes_5AL_F9D74ADB1.3 PAC:31895029	High	No	235		Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -26.766 AMFE: -0.480 GC content %: 55.745

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).