Gene
Taestivum Traes 5AS 0799FC0A0
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5AS_0799FC0A0 Traes_5AS_0799FC0A0 |
ta_iwgsc_5as_v1_1549921 | 1565 | 3835 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5AS_0799FC0A0.1 Traes_5AS_0799FC0A0.1 PAC:31867947 |
Low | No | 1654 | Get ORF Coding potential... Type: noncoding Potential: -0.102 Folding energies... MFEI: -28.579 AMFE: -0.597 GC content %: 47.884 | |
| Taestivum_Traes_5AS_0799FC0A0.12 Traes_5AS_0799FC0A0.12 PAC:31867944 |
Low | No | 1833 | Get ORF Coding potential... Type: noncoding Potential: 0.000 Folding energies... MFEI: -28.331 AMFE: -0.599 GC content %: 47.300 | |
| Taestivum_Traes_5AS_0799FC0A0.13 Traes_5AS_0799FC0A0.13 PAC:31867945 |
Low | No | 1647 | Get ORF Coding potential... Type: noncoding Potential: -0.110 Folding energies... MFEI: -29.144 AMFE: -0.602 GC content %: 48.452 | |
| Taestivum_Traes_5AS_0799FC0A0.14 Traes_5AS_0799FC0A0.14 PAC:31867946 |
Low | No | 1695 | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -28.791 AMFE: -0.596 GC content %: 48.319 | |
| Taestivum_Traes_5AS_0799FC0A0.6 Traes_5AS_0799FC0A0.6 PAC:31867940 |
Low | No | 1515 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -28.944 AMFE: -0.598 GC content %: 48.383 | |
| Taestivum_Traes_5AS_0799FC0A0.7 Traes_5AS_0799FC0A0.7 PAC:31867939 |
Low | No | 1607 | Get ORF Coding potential... Type: noncoding Potential: -0.162 Folding energies... MFEI: -28.519 AMFE: -0.584 GC content %: 48.849 | |
| Taestivum_Traes_5AS_0799FC0A0.8 Traes_5AS_0799FC0A0.8 PAC:31867938 |
Low | No | 1435 | Get ORF Coding potential... Type: noncoding Potential: -0.140 Folding energies... MFEI: -29.192 AMFE: -0.565 GC content %: 51.707 | |
| Taestivum_Traes_5AS_0799FC0A0.9 Traes_5AS_0799FC0A0.9 PAC:31867941 |
High | No | 1142 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -29.483 AMFE: -0.575 GC content %: 51.313 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
