GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AS_129141C69 Traes_5AS_129141C69	ta_iwgsc_5as_v1_1515240	3	3078	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AS_129141C69.1 Traes_5AS_129141C69.1 PAC:31850698	Low	No	510		Get ORF Coding potential... Type: noncoding Potential: -0.629 Folding energies... MFEI: -31.647 AMFE: -0.607 GC content %: 52.157
Taestivum_Traes_5AS_129141C69.2 Traes_5AS_129141C69.2 PAC:31850699	High	No	234		Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -34.957 AMFE: -0.553 GC content %: 63.248

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).