Gene
Taestivum Traes 5AS 1FD9AEDF7
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5AS_1FD9AEDF7 Traes_5AS_1FD9AEDF7 |
ta_iwgsc_5as_v1_1522741 | 2 | 10273 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5AS_1FD9AEDF7.10 Traes_5AS_1FD9AEDF7.10 PAC:31938029 |
High | No | 1630 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -32.098 AMFE: -0.688 GC content %: 46.626 | |
| Taestivum_Traes_5AS_1FD9AEDF7.11 Traes_5AS_1FD9AEDF7.11 PAC:31938030 |
Low | No | 2048 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -31.123 AMFE: -0.671 GC content %: 46.387 | |
| Taestivum_Traes_5AS_1FD9AEDF7.12 Traes_5AS_1FD9AEDF7.12 PAC:31938032 |
Low | No | 1887 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -27.599 AMFE: -0.663 GC content %: 41.653 | |
| Taestivum_Traes_5AS_1FD9AEDF7.13 Traes_5AS_1FD9AEDF7.13 PAC:31938031 |
Low | No | 1969 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -31.072 AMFE: -0.661 GC content %: 46.978 | |
| Taestivum_Traes_5AS_1FD9AEDF7.14 Traes_5AS_1FD9AEDF7.14 PAC:31938033 |
Low | No | 840 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -31.762 AMFE: -0.626 GC content %: 50.714 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
