Gene
Taestivum Traes 5AS 4AF9A3CA7
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5AS_4AF9A3CA7 Traes_5AS_4AF9A3CA7 |
ta_iwgsc_5as_v1_1548861 | 2 | 5796 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5AS_4AF9A3CA7.18 Traes_5AS_4AF9A3CA7.18 PAC:31772865 |
High | No | 512 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -24.531 AMFE: -0.537 GC content %: 45.703 | |
| Taestivum_Traes_5AS_4AF9A3CA7.19 Traes_5AS_4AF9A3CA7.19 PAC:31772870 |
High | No | 1234 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -28.323 AMFE: -0.630 GC content %: 44.976 | |
| Taestivum_Traes_5AS_4AF9A3CA7.20 Traes_5AS_4AF9A3CA7.20 PAC:31772867 |
High | No | 1223 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -27.939 AMFE: -0.622 GC content %: 44.890 | |
| Taestivum_Traes_5AS_4AF9A3CA7.21 Traes_5AS_4AF9A3CA7.21 PAC:31772866 |
Low | No | 2287 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -27.390 AMFE: -0.639 GC content %: 42.851 | |
| Taestivum_Traes_5AS_4AF9A3CA7.22 Traes_5AS_4AF9A3CA7.22 PAC:31772871 |
Low | No | 2284 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -27.452 AMFE: -0.641 GC content %: 42.820 | |
| Taestivum_Traes_5AS_4AF9A3CA7.23 Traes_5AS_4AF9A3CA7.23 PAC:31772868 |
Low | No | 1319 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -29.045 AMFE: -0.623 GC content %: 46.626 | |
| Taestivum_Traes_5AS_4AF9A3CA7.24 Traes_5AS_4AF9A3CA7.24 PAC:31772869 |
Low | No | 1316 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -29.157 AMFE: -0.626 GC content %: 46.581 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_5AS_4AF9A3CA7.22 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_TAe | |
| Taestivum_Traes_5AS_4AF9A3CA7.23 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_TAe | |
| Taestivum_Traes_5AS_4AF9A3CA7.24 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_TAe | |
| Taestivum_Traes_5AS_4AF9A3CA7.21 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_TAe |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
