Gene
Taestivum Traes 5AS FC36BFCD3
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5AS_FC36BFCD3 Traes_5AS_FC36BFCD3 |
ta_iwgsc_5as_v1_384335 | 3176 | 6407 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5AS_FC36BFCD3.10 Traes_5AS_FC36BFCD3.10 PAC:31739525 |
Low | No | 1315 | Get ORF Coding potential... Type: noncoding Potential: -0.043 Folding energies... MFEI: -26.715 AMFE: -0.654 GC content %: 40.837 | |
| Taestivum_Traes_5AS_FC36BFCD3.12 Traes_5AS_FC36BFCD3.12 PAC:31739524 |
Low | No | 1187 | Get ORF Coding potential... Type: noncoding Potential: -0.022 Folding energies... MFEI: -29.099 AMFE: -0.669 GC content %: 43.471 | |
| Taestivum_Traes_5AS_FC36BFCD3.14 Traes_5AS_FC36BFCD3.14 PAC:31739534 |
Low | No | 1410 | Get ORF Coding potential... Type: noncoding Potential: -0.006 Folding energies... MFEI: -28.149 AMFE: -0.661 GC content %: 42.553 | |
| Taestivum_Traes_5AS_FC36BFCD3.15 Traes_5AS_FC36BFCD3.15 PAC:31739528 |
Low | No | 1312 | Get ORF Coding potential... Type: noncoding Potential: -0.032 Folding energies... MFEI: -28.209 AMFE: -0.668 GC content %: 42.226 | |
| Taestivum_Traes_5AS_FC36BFCD3.16 Traes_5AS_FC36BFCD3.16 PAC:31739532 |
Low | No | 1528 | Get ORF Coding potential... Type: noncoding Potential: -0.012 Folding energies... MFEI: -27.572 AMFE: -0.654 GC content %: 42.147 | |
| Taestivum_Traes_5AS_FC36BFCD3.19 Traes_5AS_FC36BFCD3.19 PAC:31739533 |
Low | No | 1218 | Get ORF Coding potential... Type: noncoding Potential: -0.018 Folding energies... MFEI: -27.759 AMFE: -0.662 GC content %: 41.954 | |
| Taestivum_Traes_5AS_FC36BFCD3.2 Traes_5AS_FC36BFCD3.2 PAC:31739517 |
Low | No | 1937 | Get ORF Coding potential... Type: noncoding Potential: -0.007 Folding energies... MFEI: -26.350 AMFE: -0.659 GC content %: 40.010 | |
| Taestivum_Traes_5AS_FC36BFCD3.3 Traes_5AS_FC36BFCD3.3 PAC:31739518 |
Low | No | 1491 | Get ORF Coding potential... Type: noncoding Potential: -0.056 Folding energies... MFEI: -26.298 AMFE: -0.668 GC content %: 39.370 | |
| Taestivum_Traes_5AS_FC36BFCD3.4 Traes_5AS_FC36BFCD3.4 PAC:31739516 |
Low | No | 1618 | Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -25.989 AMFE: -0.665 GC content %: 39.061 | |
| Taestivum_Traes_5AS_FC36BFCD3.5 Traes_5AS_FC36BFCD3.5 PAC:31739519 |
Low | No | 1275 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -28.008 AMFE: -0.665 GC content %: 42.118 | |
| Taestivum_Traes_5AS_FC36BFCD3.7 Traes_5AS_FC36BFCD3.7 PAC:31739521 |
Low | No | 1431 | Get ORF Coding potential... Type: noncoding Potential: -0.052 Folding energies... MFEI: -26.457 AMFE: -0.660 GC content %: 40.112 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
