Gene
Taestivum Traes 5BL 02BD43B03
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_02BD43B03 Traes_5BL_02BD43B03 |
ta_iwgsc_5bl_v1_10920758 | 1225 | 4711 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_02BD43B03.10 Traes_5BL_02BD43B03.10 PAC:31907814 |
High | No | 1413 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -27.707 AMFE: -0.660 GC content %: 41.967 | |
| Taestivum_Traes_5BL_02BD43B03.11 Traes_5BL_02BD43B03.11 PAC:31907815 |
High | No | 1879 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -31.102 AMFE: -0.630 GC content %: 49.388 | |
| Taestivum_Traes_5BL_02BD43B03.12 Traes_5BL_02BD43B03.12 PAC:31907816 |
High | No | 1791 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -31.279 AMFE: -0.642 GC content %: 48.744 | |
| Taestivum_Traes_5BL_02BD43B03.13 Traes_5BL_02BD43B03.13 PAC:31907817 |
High | No | 1404 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -28.098 AMFE: -0.673 GC content %: 41.738 | |
| Taestivum_Traes_5BL_02BD43B03.14 Traes_5BL_02BD43B03.14 PAC:31907819 |
High | No | 1549 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -27.405 AMFE: -0.667 GC content %: 41.059 | |
| Taestivum_Traes_5BL_02BD43B03.15 Traes_5BL_02BD43B03.15 PAC:31907818 |
High | No | 1442 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -27.607 AMFE: -0.683 GC content %: 40.430 | |
| Taestivum_Traes_5BL_02BD43B03.16 Traes_5BL_02BD43B03.16 PAC:31907821 |
High | No | 2064 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -27.941 AMFE: -0.661 GC content %: 42.248 | |
| Taestivum_Traes_5BL_02BD43B03.17 Traes_5BL_02BD43B03.17 PAC:31907820 |
High | No | 1801 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -27.418 AMFE: -0.673 GC content %: 40.755 | |
| Taestivum_Traes_5BL_02BD43B03.18 Traes_5BL_02BD43B03.18 PAC:31907824 |
High | No | 1302 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -27.788 AMFE: -0.671 GC content %: 41.398 | |
| Taestivum_Traes_5BL_02BD43B03.19 Traes_5BL_02BD43B03.19 PAC:31907822 |
High | No | 1579 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -29.455 AMFE: -0.676 GC content %: 43.572 | |
| Taestivum_Traes_5BL_02BD43B03.2 Traes_5BL_02BD43B03.2 PAC:31907805 |
High | No | 2090 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -31.517 AMFE: -0.648 GC content %: 48.612 | |
| Taestivum_Traes_5BL_02BD43B03.20 Traes_5BL_02BD43B03.20 PAC:31907825 |
High | No | 1589 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -29.283 AMFE: -0.673 GC content %: 43.486 | |
| Taestivum_Traes_5BL_02BD43B03.21 Traes_5BL_02BD43B03.21 PAC:31907823 |
High | No | 1542 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -27.341 AMFE: -0.681 GC content %: 40.143 | |
| Taestivum_Traes_5BL_02BD43B03.22 Traes_5BL_02BD43B03.22 PAC:31907826 |
High | No | 1686 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -32.278 AMFE: -0.643 GC content %: 50.237 | |
| Taestivum_Traes_5BL_02BD43B03.23 Traes_5BL_02BD43B03.23 PAC:31907828 |
High | No | 1588 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -27.513 AMFE: -0.701 GC content %: 39.232 | |
| Taestivum_Traes_5BL_02BD43B03.24 Traes_5BL_02BD43B03.24 PAC:31907827 |
High | No | 1596 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -27.726 AMFE: -0.700 GC content %: 39.599 | |
| Taestivum_Traes_5BL_02BD43B03.3 Traes_5BL_02BD43B03.3 PAC:31907806 |
High | No | 1803 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -31.453 AMFE: -0.634 GC content %: 49.584 | |
| Taestivum_Traes_5BL_02BD43B03.4 Traes_5BL_02BD43B03.4 PAC:31907807 |
High | No | 1957 | Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -30.782 AMFE: -0.627 GC content %: 49.106 | |
| Taestivum_Traes_5BL_02BD43B03.6 Traes_5BL_02BD43B03.6 PAC:31907809 |
High | No | 2071 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -30.406 AMFE: -0.650 GC content %: 46.789 | |
| Taestivum_Traes_5BL_02BD43B03.7 Traes_5BL_02BD43B03.7 PAC:31907811 |
High | No | 1273 | Get ORF Coding potential... Type: noncoding Potential: -0.520 Folding energies... MFEI: -27.502 AMFE: -0.659 GC content %: 41.712 | |
| Taestivum_Traes_5BL_02BD43B03.8 Traes_5BL_02BD43B03.8 PAC:31907813 |
High | No | 2061 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -31.295 AMFE: -0.658 GC content %: 47.550 | |
| Taestivum_Traes_5BL_02BD43B03.9 Traes_5BL_02BD43B03.9 PAC:31907812 |
High | No | 1964 | Get ORF Coding potential... Type: noncoding Potential: -0.638 Folding energies... MFEI: -30.759 AMFE: -0.643 GC content %: 47.862 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
