Gene
Taestivum Traes 5BL 2218E73E9
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_2218E73E9 Traes_5BL_2218E73E9 |
ta_iwgsc_5bl_v1_10834224 | 8694 | 14071 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_2218E73E9.10 Traes_5BL_2218E73E9.10 PAC:31973512 |
Low | No | 2177 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -29.821 AMFE: -0.623 GC content %: 47.864 | |
| Taestivum_Traes_5BL_2218E73E9.13 Traes_5BL_2218E73E9.13 PAC:31973516 |
Low | No | 2256 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -30.909 AMFE: -0.638 GC content %: 48.449 | |
| Taestivum_Traes_5BL_2218E73E9.2 Traes_5BL_2218E73E9.2 PAC:31973505 |
Low | No | 2410 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -29.834 AMFE: -0.630 GC content %: 47.344 | |
| Taestivum_Traes_5BL_2218E73E9.21 Traes_5BL_2218E73E9.21 PAC:31973522 |
Low | No | 2265 | Get ORF Coding potential... Type: noncoding Potential: -0.028 Folding energies... MFEI: -30.349 AMFE: -0.636 GC content %: 47.726 | |
| Taestivum_Traes_5BL_2218E73E9.22 Traes_5BL_2218E73E9.22 PAC:31973525 |
Low | No | 2283 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -30.565 AMFE: -0.633 GC content %: 48.270 | |
| Taestivum_Traes_5BL_2218E73E9.23 Traes_5BL_2218E73E9.23 PAC:31973526 |
Low | No | 2184 | Get ORF Coding potential... Type: noncoding Potential: -0.044 Folding energies... MFEI: -30.426 AMFE: -0.636 GC content %: 47.802 | |
| Taestivum_Traes_5BL_2218E73E9.24 Traes_5BL_2218E73E9.24 PAC:31973523 |
Low | No | 2225 | Get ORF Coding potential... Type: noncoding Potential: -0.026 Folding energies... MFEI: -30.706 AMFE: -0.637 GC content %: 48.180 | |
| Taestivum_Traes_5BL_2218E73E9.3 Traes_5BL_2218E73E9.3 PAC:31973504 |
Low | No | 4151 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -28.030 AMFE: -0.666 GC content %: 42.110 | |
| Taestivum_Traes_5BL_2218E73E9.33 Traes_5BL_2218E73E9.33 PAC:31973531 |
Low | No | 2306 | Get ORF Coding potential... Type: noncoding Potential: -0.406 Folding energies... MFEI: -27.971 AMFE: -0.639 GC content %: 43.755 | |
| Taestivum_Traes_5BL_2218E73E9.34 Traes_5BL_2218E73E9.34 PAC:31973542 |
Low | No | 1866 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -27.998 AMFE: -0.673 GC content %: 41.586 | |
| Taestivum_Traes_5BL_2218E73E9.35 Traes_5BL_2218E73E9.35 PAC:31973536 |
Low | No | 2417 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -25.987 AMFE: -0.650 GC content %: 40.008 | |
| Taestivum_Traes_5BL_2218E73E9.36 Traes_5BL_2218E73E9.36 PAC:31973530 |
Low | No | 1540 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -27.981 AMFE: -0.649 GC content %: 43.117 | |
| Taestivum_Traes_5BL_2218E73E9.37 Traes_5BL_2218E73E9.37 PAC:31973534 |
Low | No | 1697 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -27.342 AMFE: -0.642 GC content %: 42.605 | |
| Taestivum_Traes_5BL_2218E73E9.38 Traes_5BL_2218E73E9.38 PAC:31973537 |
Low | No | 1278 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -28.169 AMFE: -0.649 GC content %: 43.427 | |
| Taestivum_Traes_5BL_2218E73E9.39 Traes_5BL_2218E73E9.39 PAC:31973533 |
Low | No | 2972 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -29.105 AMFE: -0.631 GC content %: 46.131 | |
| Taestivum_Traes_5BL_2218E73E9.4 Traes_5BL_2218E73E9.4 PAC:31973506 |
Low | No | 2811 | Get ORF Coding potential... Type: noncoding Potential: -0.229 Folding energies... MFEI: -29.441 AMFE: -0.645 GC content %: 45.642 | |
| Taestivum_Traes_5BL_2218E73E9.46 Traes_5BL_2218E73E9.46 PAC:31973550 |
Low | No | 3151 | Get ORF Coding potential... Type: noncoding Potential: -0.002 Folding energies... MFEI: -28.381 AMFE: -0.637 GC content %: 44.526 | |
| Taestivum_Traes_5BL_2218E73E9.47 Traes_5BL_2218E73E9.47 PAC:31973547 |
Low | No | 2393 | Get ORF Coding potential... Type: noncoding Potential: -0.094 Folding energies... MFEI: -29.925 AMFE: -0.630 GC content %: 47.472 | |
| Taestivum_Traes_5BL_2218E73E9.48 Traes_5BL_2218E73E9.48 PAC:31973544 |
Low | No | 2814 | Get ORF Coding potential... Type: noncoding Potential: -0.057 Folding energies... MFEI: -28.763 AMFE: -0.649 GC content %: 44.350 | |
| Taestivum_Traes_5BL_2218E73E9.49 Traes_5BL_2218E73E9.49 PAC:31973551 |
Low | No | 3015 | Get ORF Coding potential... Type: noncoding Potential: -0.066 Folding energies... MFEI: -28.816 AMFE: -0.653 GC content %: 44.113 | |
| Taestivum_Traes_5BL_2218E73E9.5 Traes_5BL_2218E73E9.5 PAC:31973507 |
Low | No | 2406 | Get ORF Coding potential... Type: noncoding Potential: -0.037 Folding energies... MFEI: -29.713 AMFE: -0.632 GC content %: 47.049 | |
| Taestivum_Traes_5BL_2218E73E9.6 Traes_5BL_2218E73E9.6 PAC:31973508 |
Low | No | 2182 | Get ORF Coding potential... Type: noncoding Potential: -0.023 Folding energies... MFEI: -30.440 AMFE: -0.631 GC content %: 48.258 | |
| Taestivum_Traes_5BL_2218E73E9.9 Traes_5BL_2218E73E9.9 PAC:31973510 |
Low | No | 2644 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -29.391 AMFE: -0.645 GC content %: 45.537 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
