GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_3023944A7 Traes_5BL_3023944A7	ta_iwgsc_5bl_v1_10921862	22	2402	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_3023944A7.1 Traes_5BL_3023944A7.1 PAC:31834950	Low	No	969		Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -30.165 AMFE: -0.666 GC content %: 45.304
Taestivum_Traes_5BL_3023944A7.2 Traes_5BL_3023944A7.2 PAC:31834949	Low	No	846		Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -30.733 AMFE: -0.670 GC content %: 45.863
Taestivum_Traes_5BL_3023944A7.3 Traes_5BL_3023944A7.3 PAC:31834951	High	No	1274		Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -29.608 AMFE: -0.641 GC content %: 46.154

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).