Gene
Taestivum Traes 5BL 30A121242
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_30A121242 Traes_5BL_30A121242 |
ta_iwgsc_5bl_v1_10804939 | 2945 | 6887 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_30A121242.1 Traes_5BL_30A121242.1 PAC:31990058 |
Low | No | 3021 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -28.706 AMFE: -0.649 GC content %: 44.257 | |
| Taestivum_Traes_5BL_30A121242.2 Traes_5BL_30A121242.2 PAC:31990053 |
Low | No | 3011 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -28.745 AMFE: -0.649 GC content %: 44.304 | |
| Taestivum_Traes_5BL_30A121242.3 Traes_5BL_30A121242.3 PAC:31990054 |
Low | No | 2298 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -29.330 AMFE: -0.641 GC content %: 45.779 | |
| Taestivum_Traes_5BL_30A121242.4 Traes_5BL_30A121242.4 PAC:31990055 |
Low | No | 2917 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -28.502 AMFE: -0.645 GC content %: 44.189 | |
| Taestivum_Traes_5BL_30A121242.5 Traes_5BL_30A121242.5 PAC:31990056 |
Low | No | 1003 | Get ORF Coding potential... Type: noncoding Potential: -1.378 Folding energies... MFEI: -32.104 AMFE: -0.613 GC content %: 52.343 | |
| Taestivum_Traes_5BL_30A121242.6 Traes_5BL_30A121242.6 PAC:31990057 |
High | No | 443 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -30.271 AMFE: -0.497 GC content %: 60.948 | |
| Taestivum_Traes_5BL_30A121242.7 Traes_5BL_30A121242.7 PAC:31990059 |
High | No | 2827 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -28.620 AMFE: -0.643 GC content %: 44.499 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
