GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_32FA43577 Traes_5BL_32FA43577	ta_iwgsc_5bl_v1_10820931	5849	8777	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_32FA43577.3 Traes_5BL_32FA43577.3 PAC:31785353	High	No	798		Get ORF Coding potential... Type: noncoding Potential: -0.547 Folding energies... MFEI: -31.028 AMFE: -0.621 GC content %: 50.000
Taestivum_Traes_5BL_32FA43577.4 Traes_5BL_32FA43577.4 PAC:31785354	High	No	781		Get ORF Coding potential... Type: noncoding Potential: -0.473 Folding energies... MFEI: -32.612 AMFE: -0.634 GC content %: 51.472

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).