Gene
Taestivum Traes 5BL 3A58EE4AD
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_3A58EE4AD Traes_5BL_3A58EE4AD |
ta_iwgsc_5bl_v1_10889914 | 11078 | 16992 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_3A58EE4AD.10 Traes_5BL_3A58EE4AD.10 PAC:31872067 |
High | No | 1191 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -25.424 AMFE: -0.633 GC content %: 40.134 | |
| Taestivum_Traes_5BL_3A58EE4AD.11 Traes_5BL_3A58EE4AD.11 PAC:31872068 |
High | No | 580 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -28.845 AMFE: -0.591 GC content %: 48.793 | |
| Taestivum_Traes_5BL_3A58EE4AD.12 Traes_5BL_3A58EE4AD.12 PAC:31872071 |
High | No | 616 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -33.945 AMFE: -0.668 GC content %: 50.812 | |
| Taestivum_Traes_5BL_3A58EE4AD.13 Traes_5BL_3A58EE4AD.13 PAC:31872069 |
High | No | 533 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -29.850 AMFE: -0.642 GC content %: 46.529 | |
| Taestivum_Traes_5BL_3A58EE4AD.14 Traes_5BL_3A58EE4AD.14 PAC:31872070 |
High | No | 875 | Get ORF Coding potential... Type: noncoding Potential: -1.405 Folding energies... MFEI: -27.417 AMFE: -0.648 GC content %: 42.286 | |
| Taestivum_Traes_5BL_3A58EE4AD.7 Traes_5BL_3A58EE4AD.7 PAC:31872064 |
Low | No | 1152 | Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -33.967 AMFE: -0.683 GC content %: 49.740 | |
| Taestivum_Traes_5BL_3A58EE4AD.8 Traes_5BL_3A58EE4AD.8 PAC:31872065 |
High | No | 568 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -34.912 AMFE: -0.618 GC content %: 56.514 | |
| Taestivum_Traes_5BL_3A58EE4AD.9 Traes_5BL_3A58EE4AD.9 PAC:31872066 |
High | No | 759 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -28.011 AMFE: -0.618 GC content %: 45.323 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
