Gene
Taestivum Traes 5BL 3ACB1AF68
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_3ACB1AF68 Traes_5BL_3ACB1AF68 |
ta_iwgsc_5bl_v1_5976091 | 4 | 4911 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_3ACB1AF68.1 Traes_5BL_3ACB1AF68.1 PAC:31961327 |
Low | No | 1003 | Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -34.786 AMFE: -0.559 GC content %: 62.213 | |
| Taestivum_Traes_5BL_3ACB1AF68.10 Traes_5BL_3ACB1AF68.10 PAC:31961335 |
Low | No | 2204 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -29.678 AMFE: -0.624 GC content %: 47.595 | |
| Taestivum_Traes_5BL_3ACB1AF68.2 Traes_5BL_3ACB1AF68.2 PAC:31961326 |
Low | No | 1201 | Get ORF Coding potential... Type: noncoding Potential: -0.611 Folding energies... MFEI: -32.823 AMFE: -0.569 GC content %: 57.702 | |
| Taestivum_Traes_5BL_3ACB1AF68.3 Traes_5BL_3ACB1AF68.3 PAC:31961328 |
High | No | 1367 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -23.453 AMFE: -0.660 GC content %: 35.552 | |
| Taestivum_Traes_5BL_3ACB1AF68.4 Traes_5BL_3ACB1AF68.4 PAC:31961329 |
High | No | 1563 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -25.298 AMFE: -0.677 GC content %: 37.364 | |
| Taestivum_Traes_5BL_3ACB1AF68.5 Traes_5BL_3ACB1AF68.5 PAC:31961330 |
High | No | 2098 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.218 AMFE: -0.667 GC content %: 36.320 | |
| Taestivum_Traes_5BL_3ACB1AF68.6 Traes_5BL_3ACB1AF68.6 PAC:31961331 |
High | No | 1753 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -24.963 AMFE: -0.672 GC content %: 37.136 | |
| Taestivum_Traes_5BL_3ACB1AF68.7 Traes_5BL_3ACB1AF68.7 PAC:31961332 |
Low | No | 2476 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -28.873 AMFE: -0.628 GC content %: 46.002 | |
| Taestivum_Traes_5BL_3ACB1AF68.8 Traes_5BL_3ACB1AF68.8 PAC:31961333 |
Low | No | 2208 | Get ORF Coding potential... Type: noncoding Potential: -0.627 Folding energies... MFEI: -29.742 AMFE: -0.624 GC content %: 47.690 | |
| Taestivum_Traes_5BL_3ACB1AF68.9 Traes_5BL_3ACB1AF68.9 PAC:31961334 |
High | No | 1281 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -23.997 AMFE: -0.667 GC content %: 35.988 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
