GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_5A2634836 Traes_5BL_5A2634836	ta_iwgsc_5bl_v1_10827781	2	2173	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_5A2634836.3 Traes_5BL_5A2634836.3 PAC:31744047	High	No	475		Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -32.947 AMFE: -0.658 GC content %: 50.105
Taestivum_Traes_5BL_5A2634836.4 Traes_5BL_5A2634836.4 PAC:31744048	High	No	477		Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -31.719 AMFE: -0.641 GC content %: 49.476

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).