GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_5F55D84A9 Traes_5BL_5F55D84A9	ta_iwgsc_5bl_v1_10796696	3	682	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_5F55D84A9.1 Traes_5BL_5F55D84A9.1 PAC:31896300	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -30.855 AMFE: -0.562 GC content %: 54.899
Taestivum_Traes_5BL_5F55D84A9.2 Traes_5BL_5F55D84A9.2 PAC:31896299	High	No	568		Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -34.489 AMFE: -0.578 GC content %: 59.683

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).