Gene
Taestivum Traes 5BL 6264502EF
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_6264502EF Traes_5BL_6264502EF |
ta_iwgsc_5bl_v1_10841169 | 2739 | 9722 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_6264502EF.1 Traes_5BL_6264502EF.1 PAC:31919125 |
High | No | 4040 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -26.376 AMFE: -0.640 GC content %: 41.213 | |
| Taestivum_Traes_5BL_6264502EF.10 Traes_5BL_6264502EF.10 PAC:31919123 |
High | No | 3851 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -26.253 AMFE: -0.647 GC content %: 40.561 | |
| Taestivum_Traes_5BL_6264502EF.11 Traes_5BL_6264502EF.11 PAC:31919122 |
High | No | 4536 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.873 AMFE: -0.648 GC content %: 39.903 | |
| Taestivum_Traes_5BL_6264502EF.12 Traes_5BL_6264502EF.12 PAC:31919131 |
High | No | 2007 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -28.122 AMFE: -0.646 GC content %: 43.548 | |
| Taestivum_Traes_5BL_6264502EF.13 Traes_5BL_6264502EF.13 PAC:31919132 |
High | No | 5462 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -26.377 AMFE: -0.675 GC content %: 39.088 | |
| Taestivum_Traes_5BL_6264502EF.14 Traes_5BL_6264502EF.14 PAC:31919133 |
High | No | 4735 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -26.952 AMFE: -0.677 GC content %: 39.831 | |
| Taestivum_Traes_5BL_6264502EF.15 Traes_5BL_6264502EF.15 PAC:31919134 |
High | No | 5447 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -26.424 AMFE: -0.676 GC content %: 39.086 | |
| Taestivum_Traes_5BL_6264502EF.16 Traes_5BL_6264502EF.16 PAC:31919135 |
High | No | 3391 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -25.680 AMFE: -0.654 GC content %: 39.251 | |
| Taestivum_Traes_5BL_6264502EF.17 Traes_5BL_6264502EF.17 PAC:31919137 |
High | No | 4476 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.125 AMFE: -0.681 GC content %: 36.908 | |
| Taestivum_Traes_5BL_6264502EF.18 Traes_5BL_6264502EF.18 PAC:31919140 |
High | No | 4601 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -25.079 AMFE: -0.686 GC content %: 36.557 | |
| Taestivum_Traes_5BL_6264502EF.19 Traes_5BL_6264502EF.19 PAC:31919139 |
High | No | 3741 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -25.138 AMFE: -0.680 GC content %: 36.942 | |
| Taestivum_Traes_5BL_6264502EF.2 Traes_5BL_6264502EF.2 PAC:31919129 |
High | No | 3813 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -25.827 AMFE: -0.665 GC content %: 38.841 | |
| Taestivum_Traes_5BL_6264502EF.20 Traes_5BL_6264502EF.20 PAC:31919136 |
High | No | 5268 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -25.218 AMFE: -0.681 GC content %: 37.035 | |
| Taestivum_Traes_5BL_6264502EF.21 Traes_5BL_6264502EF.21 PAC:31919142 |
High | No | 3586 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -26.553 AMFE: -0.650 GC content %: 40.881 | |
| Taestivum_Traes_5BL_6264502EF.22 Traes_5BL_6264502EF.22 PAC:31919143 |
High | No | 3109 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -27.150 AMFE: -0.646 GC content %: 42.007 | |
| Taestivum_Traes_5BL_6264502EF.23 Traes_5BL_6264502EF.23 PAC:31919141 |
High | No | 1624 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -30.296 AMFE: -0.636 GC content %: 47.660 | |
| Taestivum_Traes_5BL_6264502EF.24 Traes_5BL_6264502EF.24 PAC:31919144 |
High | No | 4885 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -25.857 AMFE: -0.645 GC content %: 40.061 | |
| Taestivum_Traes_5BL_6264502EF.25 Traes_5BL_6264502EF.25 PAC:31919145 |
High | No | 2918 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -25.353 AMFE: -0.661 GC content %: 38.382 | |
| Taestivum_Traes_5BL_6264502EF.26 Traes_5BL_6264502EF.26 PAC:31919119 |
High | No | 645 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -33.147 AMFE: -0.572 GC content %: 57.984 | |
| Taestivum_Traes_5BL_6264502EF.27 Traes_5BL_6264502EF.27 PAC:31919138 |
High | No | 5100 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -24.994 AMFE: -0.678 GC content %: 36.863 | |
| Taestivum_Traes_5BL_6264502EF.3 Traes_5BL_6264502EF.3 PAC:31919120 |
High | No | 2937 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -25.397 AMFE: -0.662 GC content %: 38.338 | |
| Taestivum_Traes_5BL_6264502EF.4 Traes_5BL_6264502EF.4 PAC:31919130 |
High | No | 2475 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -27.564 AMFE: -0.647 GC content %: 42.626 | |
| Taestivum_Traes_5BL_6264502EF.5 Traes_5BL_6264502EF.5 PAC:31919121 |
High | No | 2816 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -27.219 AMFE: -0.647 GC content %: 42.081 | |
| Taestivum_Traes_5BL_6264502EF.6 Traes_5BL_6264502EF.6 PAC:31919127 |
High | No | 3659 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -26.805 AMFE: -0.654 GC content %: 40.967 | |
| Taestivum_Traes_5BL_6264502EF.7 Traes_5BL_6264502EF.7 PAC:31919124 |
High | No | 3857 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -26.541 AMFE: -0.655 GC content %: 40.550 | |
| Taestivum_Traes_5BL_6264502EF.8 Traes_5BL_6264502EF.8 PAC:31919126 |
High | No | 3430 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -26.557 AMFE: -0.650 GC content %: 40.845 | |
| Taestivum_Traes_5BL_6264502EF.9 Traes_5BL_6264502EF.9 PAC:31919128 |
High | No | 4534 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -26.070 AMFE: -0.649 GC content %: 40.185 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
