GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_63B10BFDF Traes_5BL_63B10BFDF	ta_iwgsc_5bl_v1_10923008	1868	2907	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_63B10BFDF.1 Traes_5BL_63B10BFDF.1 PAC:31800731	High	No	640		Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -35.203 AMFE: -0.621 GC content %: 56.719
Taestivum_Traes_5BL_63B10BFDF.2 Traes_5BL_63B10BFDF.2 PAC:31800732	High	No	844		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -34.159 AMFE: -0.646 GC content %: 52.844

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).