Gene
Taestivum Traes 5BL 68452F90E
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_68452F90E Traes_5BL_68452F90E |
ta_iwgsc_5bl_v1_10866916 | 1155 | 4966 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_68452F90E.1 Traes_5BL_68452F90E.1 PAC:31857342 |
High | No | 1164 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -33.024 AMFE: -0.645 GC content %: 51.203 | |
| Taestivum_Traes_5BL_68452F90E.10 Traes_5BL_68452F90E.10 PAC:31857335 |
High | No | 1330 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -32.865 AMFE: -0.662 GC content %: 49.624 | |
| Taestivum_Traes_5BL_68452F90E.11 Traes_5BL_68452F90E.11 PAC:31857320 |
High | No | 1403 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -32.780 AMFE: -0.667 GC content %: 49.109 | |
| Taestivum_Traes_5BL_68452F90E.12 Traes_5BL_68452F90E.12 PAC:31857327 |
High | No | 1265 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -33.051 AMFE: -0.659 GC content %: 50.119 | |
| Taestivum_Traes_5BL_68452F90E.13 Traes_5BL_68452F90E.13 PAC:31857317 |
High | No | 1849 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -30.692 AMFE: -0.662 GC content %: 46.349 | |
| Taestivum_Traes_5BL_68452F90E.14 Traes_5BL_68452F90E.14 PAC:31857312 |
High | No | 1375 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -33.171 AMFE: -0.669 GC content %: 49.600 | |
| Taestivum_Traes_5BL_68452F90E.15 Traes_5BL_68452F90E.15 PAC:31857314 |
High | No | 1347 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -32.131 AMFE: -0.656 GC content %: 48.998 | |
| Taestivum_Traes_5BL_68452F90E.16 Traes_5BL_68452F90E.16 PAC:31857319 |
High | No | 1302 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -32.995 AMFE: -0.663 GC content %: 49.770 | |
| Taestivum_Traes_5BL_68452F90E.17 Traes_5BL_68452F90E.17 PAC:31857329 |
High | No | 1419 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -32.276 AMFE: -0.660 GC content %: 48.908 | |
| Taestivum_Traes_5BL_68452F90E.18 Traes_5BL_68452F90E.18 PAC:31857316 |
High | No | 1602 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -31.723 AMFE: -0.666 GC content %: 47.628 | |
| Taestivum_Traes_5BL_68452F90E.19 Traes_5BL_68452F90E.19 PAC:31857338 |
High | No | 1328 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -32.914 AMFE: -0.664 GC content %: 49.548 | |
| Taestivum_Traes_5BL_68452F90E.2 Traes_5BL_68452F90E.2 PAC:31857311 |
High | No | 1198 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -33.573 AMFE: -0.664 GC content %: 50.584 | |
| Taestivum_Traes_5BL_68452F90E.20 Traes_5BL_68452F90E.20 PAC:31857321 |
High | No | 1968 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -29.380 AMFE: -0.651 GC content %: 45.122 | |
| Taestivum_Traes_5BL_68452F90E.21 Traes_5BL_68452F90E.21 PAC:31857340 |
High | No | 1331 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -33.246 AMFE: -0.671 GC content %: 49.512 | |
| Taestivum_Traes_5BL_68452F90E.22 Traes_5BL_68452F90E.22 PAC:31857328 |
High | No | 1613 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -32.554 AMFE: -0.679 GC content %: 47.923 | |
| Taestivum_Traes_5BL_68452F90E.23 Traes_5BL_68452F90E.23 PAC:31857315 |
High | No | 1680 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -30.321 AMFE: -0.657 GC content %: 46.131 | |
| Taestivum_Traes_5BL_68452F90E.24 Traes_5BL_68452F90E.24 PAC:31857336 |
High | No | 1073 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -31.174 AMFE: -0.674 GC content %: 46.226 | |
| Taestivum_Traes_5BL_68452F90E.25 Traes_5BL_68452F90E.25 PAC:31857313 |
High | No | 1030 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -27.680 AMFE: -0.665 GC content %: 41.650 | |
| Taestivum_Traes_5BL_68452F90E.26 Traes_5BL_68452F90E.26 PAC:31857332 |
High | No | 1468 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -33.556 AMFE: -0.681 GC content %: 49.251 | |
| Taestivum_Traes_5BL_68452F90E.27 Traes_5BL_68452F90E.27 PAC:31857337 |
High | No | 1392 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -33.534 AMFE: -0.674 GC content %: 49.784 | |
| Taestivum_Traes_5BL_68452F90E.28 Traes_5BL_68452F90E.28 PAC:31857324 |
High | No | 1448 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -32.831 AMFE: -0.671 GC content %: 48.964 | |
| Taestivum_Traes_5BL_68452F90E.29 Traes_5BL_68452F90E.29 PAC:31857325 |
High | No | 1346 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -33.477 AMFE: -0.672 GC content %: 49.851 | |
| Taestivum_Traes_5BL_68452F90E.3 Traes_5BL_68452F90E.3 PAC:31857322 |
High | No | 1426 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -33.022 AMFE: -0.676 GC content %: 48.878 | |
| Taestivum_Traes_5BL_68452F90E.30 Traes_5BL_68452F90E.30 PAC:31857334 |
High | No | 1275 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -33.208 AMFE: -0.664 GC content %: 50.039 | |
| Taestivum_Traes_5BL_68452F90E.31 Traes_5BL_68452F90E.31 PAC:31857318 |
High | No | 1373 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -33.365 AMFE: -0.672 GC content %: 49.672 | |
| Taestivum_Traes_5BL_68452F90E.32 Traes_5BL_68452F90E.32 PAC:31857341 |
High | No | 1180 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -32.254 AMFE: -0.662 GC content %: 48.729 | |
| Taestivum_Traes_5BL_68452F90E.33 Traes_5BL_68452F90E.33 PAC:31857343 |
High | No | 791 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -24.096 AMFE: -0.631 GC content %: 38.180 | |
| Taestivum_Traes_5BL_68452F90E.4 Traes_5BL_68452F90E.4 PAC:31857339 |
High | No | 1953 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -29.483 AMFE: -0.653 GC content %: 45.161 | |
| Taestivum_Traes_5BL_68452F90E.5 Traes_5BL_68452F90E.5 PAC:31857333 |
High | No | 1358 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -33.211 AMFE: -0.669 GC content %: 49.632 | |
| Taestivum_Traes_5BL_68452F90E.6 Traes_5BL_68452F90E.6 PAC:31857323 |
High | No | 1368 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -33.472 AMFE: -0.673 GC content %: 49.708 | |
| Taestivum_Traes_5BL_68452F90E.7 Traes_5BL_68452F90E.7 PAC:31857326 |
High | No | 1393 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -32.742 AMFE: -0.668 GC content %: 49.031 | |
| Taestivum_Traes_5BL_68452F90E.8 Traes_5BL_68452F90E.8 PAC:31857331 |
High | No | 1342 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -33.413 AMFE: -0.670 GC content %: 49.851 | |
| Taestivum_Traes_5BL_68452F90E.9 Traes_5BL_68452F90E.9 PAC:31857330 |
High | No | 1621 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -31.659 AMFE: -0.666 GC content %: 47.502 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
