GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_91378F8DB Traes_5BL_91378F8DB	ta_iwgsc_5bl_v1_10918634	4	2491	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_91378F8DB.1 Traes_5BL_91378F8DB.1 PAC:31770525	High	No	1543		Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -26.578 AMFE: -0.645 GC content %: 41.218
Taestivum_Traes_5BL_91378F8DB.2 Traes_5BL_91378F8DB.2 PAC:31770526	High	No	667		Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -23.868 AMFE: -0.601 GC content %: 39.730
Taestivum_Traes_5BL_91378F8DB.3 Traes_5BL_91378F8DB.3 PAC:31770527	High	No	886		Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -25.090 AMFE: -0.607 GC content %: 41.309
Taestivum_Traes_5BL_91378F8DB.4 Traes_5BL_91378F8DB.4 PAC:31770528	High	No	704		Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -22.926 AMFE: -0.661 GC content %: 34.659

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).