GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_BB0F54487 Traes_5BL_BB0F54487	ta_iwgsc_5bl_v1_10708840	4	1837	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_BB0F54487.1 Traes_5BL_BB0F54487.1 PAC:31880266	High	No	441		Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -30.544 AMFE: -0.478 GC content %: 63.946
Taestivum_Traes_5BL_BB0F54487.2 Traes_5BL_BB0F54487.2 PAC:31880263	High	No	615		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -27.740 AMFE: -0.460 GC content %: 60.325
Taestivum_Traes_5BL_BB0F54487.3 Traes_5BL_BB0F54487.3 PAC:31880264	High	No	1626		Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -26.771 AMFE: -0.566 GC content %: 47.294
Taestivum_Traes_5BL_BB0F54487.4 Traes_5BL_BB0F54487.4 PAC:31880265	High	No	1503		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -27.159 AMFE: -0.584 GC content %: 46.507
Taestivum_Traes_5BL_BB0F54487.5 Traes_5BL_BB0F54487.5 PAC:31880267	High	No	1543		Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -26.688 AMFE: -0.582 GC content %: 45.820
Taestivum_Traes_5BL_BB0F54487.6 Traes_5BL_BB0F54487.6 PAC:31880268	High	No	1512		Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -28.175 AMFE: -0.607 GC content %: 46.429

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).