Gene
Taestivum Traes 5BL BB7FCE151
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_BB7FCE151 Traes_5BL_BB7FCE151 |
ta_iwgsc_5bl_v1_10846088 | 4 | 7121 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_BB7FCE151.24 Traes_5BL_BB7FCE151.24 PAC:31793106 |
Low | No | 1445 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -27.716 AMFE: -0.657 GC content %: 42.215 | |
| Taestivum_Traes_5BL_BB7FCE151.25 Traes_5BL_BB7FCE151.25 PAC:31793108 |
Low | No | 1230 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -30.878 AMFE: -0.644 GC content %: 47.967 | |
| Taestivum_Traes_5BL_BB7FCE151.26 Traes_5BL_BB7FCE151.26 PAC:31793110 |
Low | No | 939 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -27.721 AMFE: -0.624 GC content %: 44.409 | |
| Taestivum_Traes_5BL_BB7FCE151.27 Traes_5BL_BB7FCE151.27 PAC:31793107 |
Low | No | 348 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -25.517 AMFE: -0.580 GC content %: 43.966 | |
| Taestivum_Traes_5BL_BB7FCE151.29 Traes_5BL_BB7FCE151.29 PAC:31793111 |
High | No | 1132 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -22.792 AMFE: -0.584 GC content %: 39.046 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
