GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_D45CBC224 Traes_5BL_D45CBC224	ta_iwgsc_5bl_v1_10899556	152	2449	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_D45CBC224.1 Traes_5BL_D45CBC224.1 PAC:31991031	High	No	340		Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -27.559 AMFE: -0.586 GC content %: 47.059
Taestivum_Traes_5BL_D45CBC224.2 Traes_5BL_D45CBC224.2 PAC:31991032	High	No	667		Get ORF Coding potential... Type: noncoding Potential: -0.707 Folding energies... MFEI: -31.274 AMFE: -0.578 GC content %: 54.123
Taestivum_Traes_5BL_D45CBC224.3 Traes_5BL_D45CBC224.3 PAC:31991034	High	No	779		Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -30.308 AMFE: -0.580 GC content %: 52.246
Taestivum_Traes_5BL_D45CBC224.4 Traes_5BL_D45CBC224.4 PAC:31991033	High	No	1143		Get ORF Coding potential... Type: noncoding Potential: -0.599 Folding energies... MFEI: -27.699 AMFE: -0.645 GC content %: 42.957

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).