GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BL_E44E042FD Traes_5BL_E44E042FD	ta_iwgsc_5bl_v1_10922240	1	4367	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BL_E44E042FD.4 Traes_5BL_E44E042FD.4 PAC:32015903	High	No	802		Get ORF Coding potential... Type: noncoding Potential: -1.379 Folding energies... MFEI: -30.362 AMFE: -0.628 GC content %: 48.379
Taestivum_Traes_5BL_E44E042FD.5 Traes_5BL_E44E042FD.5 PAC:32015904	Low	No	1598		Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -32.390 AMFE: -0.654 GC content %: 49.499

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).