Gene
Taestivum Traes 5BL E654B7341
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BL_E654B7341 Traes_5BL_E654B7341 |
ta_iwgsc_5bl_v1_10853810 | 419 | 6732 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BL_E654B7341.1 Traes_5BL_E654B7341.1 PAC:31758992 |
Low | No | 3319 | Get ORF Coding potential... Type: noncoding Potential: -0.746 Folding energies... MFEI: -32.471 AMFE: -0.695 GC content %: 46.701 | |
| Taestivum_Traes_5BL_E654B7341.10 Traes_5BL_E654B7341.10 PAC:31759016 |
Low | No | 3186 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -31.864 AMFE: -0.683 GC content %: 46.642 | |
| Taestivum_Traes_5BL_E654B7341.11 Traes_5BL_E654B7341.11 PAC:31758986 |
Low | No | 3538 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -30.964 AMFE: -0.689 GC content %: 44.941 | |
| Taestivum_Traes_5BL_E654B7341.12 Traes_5BL_E654B7341.12 PAC:31758995 |
Low | No | 3093 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -32.863 AMFE: -0.696 GC content %: 47.203 | |
| Taestivum_Traes_5BL_E654B7341.13 Traes_5BL_E654B7341.13 PAC:31759025 |
Low | No | 2795 | Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -31.907 AMFE: -0.665 GC content %: 47.979 | |
| Taestivum_Traes_5BL_E654B7341.14 Traes_5BL_E654B7341.14 PAC:31759020 |
Low | No | 3195 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -31.775 AMFE: -0.682 GC content %: 46.604 | |
| Taestivum_Traes_5BL_E654B7341.15 Traes_5BL_E654B7341.15 PAC:31758996 |
Low | No | 2887 | Get ORF Coding potential... Type: noncoding Potential: -0.736 Folding energies... MFEI: -31.981 AMFE: -0.670 GC content %: 47.766 | |
| Taestivum_Traes_5BL_E654B7341.16 Traes_5BL_E654B7341.16 PAC:31758988 |
Low | No | 3287 | Get ORF Coding potential... Type: noncoding Potential: -0.746 Folding energies... MFEI: -31.786 AMFE: -0.684 GC content %: 46.456 | |
| Taestivum_Traes_5BL_E654B7341.17 Traes_5BL_E654B7341.17 PAC:31759002 |
Low | No | 2826 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -32.972 AMFE: -0.680 GC content %: 48.514 | |
| Taestivum_Traes_5BL_E654B7341.18 Traes_5BL_E654B7341.18 PAC:31759003 |
Low | No | 3074 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -31.067 AMFE: -0.676 GC content %: 45.934 | |
| Taestivum_Traes_5BL_E654B7341.19 Traes_5BL_E654B7341.19 PAC:31759005 |
Low | No | 3124 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -31.805 AMFE: -0.679 GC content %: 46.863 | |
| Taestivum_Traes_5BL_E654B7341.2 Traes_5BL_E654B7341.2 PAC:31758999 |
Low | No | 3661 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -31.117 AMFE: -0.690 GC content %: 45.124 | |
| Taestivum_Traes_5BL_E654B7341.20 Traes_5BL_E654B7341.20 PAC:31759021 |
Low | No | 2973 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -31.231 AMFE: -0.674 GC content %: 46.317 | |
| Taestivum_Traes_5BL_E654B7341.21 Traes_5BL_E654B7341.21 PAC:31759007 |
Low | No | 3198 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -31.276 AMFE: -0.679 GC content %: 46.029 | |
| Taestivum_Traes_5BL_E654B7341.22 Traes_5BL_E654B7341.22 PAC:31758994 |
Low | No | 3097 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -31.847 AMFE: -0.686 GC content %: 46.432 | |
| Taestivum_Traes_5BL_E654B7341.23 Traes_5BL_E654B7341.23 PAC:31759008 |
Low | No | 3706 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -31.438 AMFE: -0.698 GC content %: 45.035 | |
| Taestivum_Traes_5BL_E654B7341.24 Traes_5BL_E654B7341.24 PAC:31758989 |
Low | No | 2980 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -31.981 AMFE: -0.683 GC content %: 46.846 | |
| Taestivum_Traes_5BL_E654B7341.25 Traes_5BL_E654B7341.25 PAC:31759014 |
Low | No | 3670 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -31.548 AMFE: -0.696 GC content %: 45.313 | |
| Taestivum_Traes_5BL_E654B7341.26 Traes_5BL_E654B7341.26 PAC:31758990 |
Low | No | 2736 | Get ORF Coding potential... Type: noncoding Potential: -0.732 Folding energies... MFEI: -32.164 AMFE: -0.667 GC content %: 48.209 | |
| Taestivum_Traes_5BL_E654B7341.27 Traes_5BL_E654B7341.27 PAC:31758987 |
Low | No | 3732 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -31.476 AMFE: -0.698 GC content %: 45.096 | |
| Taestivum_Traes_5BL_E654B7341.28 Traes_5BL_E654B7341.28 PAC:31759004 |
Low | No | 3678 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -31.822 AMFE: -0.699 GC content %: 45.541 | |
| Taestivum_Traes_5BL_E654B7341.29 Traes_5BL_E654B7341.29 PAC:31759006 |
Low | No | 2944 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -31.155 AMFE: -0.673 GC content %: 46.298 | |
| Taestivum_Traes_5BL_E654B7341.3 Traes_5BL_E654B7341.3 PAC:31759022 |
Low | No | 2702 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -31.995 AMFE: -0.669 GC content %: 47.853 | |
| Taestivum_Traes_5BL_E654B7341.30 Traes_5BL_E654B7341.30 PAC:31759012 |
Low | No | 2800 | Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -32.029 AMFE: -0.670 GC content %: 47.821 | |
| Taestivum_Traes_5BL_E654B7341.31 Traes_5BL_E654B7341.31 PAC:31759009 |
Low | No | 3089 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -31.363 AMFE: -0.677 GC content %: 46.326 | |
| Taestivum_Traes_5BL_E654B7341.32 Traes_5BL_E654B7341.32 PAC:31759017 |
Low | No | 3444 | Get ORF Coding potential... Type: noncoding Potential: -0.749 Folding energies... MFEI: -30.793 AMFE: -0.686 GC content %: 44.919 | |
| Taestivum_Traes_5BL_E654B7341.33 Traes_5BL_E654B7341.33 PAC:31759026 |
Low | No | 3576 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -31.161 AMFE: -0.690 GC content %: 45.162 | |
| Taestivum_Traes_5BL_E654B7341.34 Traes_5BL_E654B7341.34 PAC:31759000 |
Low | Yes | 2995 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -32.227 AMFE: -0.690 GC content %: 46.678 | |
| Taestivum_Traes_5BL_E654B7341.35 Traes_5BL_E654B7341.35 PAC:31758998 |
Low | No | 2893 | Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -32.914 AMFE: -0.683 GC content %: 48.185 | |
| Taestivum_Traes_5BL_E654B7341.36 Traes_5BL_E654B7341.36 PAC:31759019 |
Low | No | 3331 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -32.600 AMFE: -0.699 GC content %: 46.623 | |
| Taestivum_Traes_5BL_E654B7341.37 Traes_5BL_E654B7341.37 PAC:31758991 |
Low | No | 2533 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -30.545 AMFE: -0.690 GC content %: 44.295 | |
| Taestivum_Traes_5BL_E654B7341.38 Traes_5BL_E654B7341.38 PAC:31758993 |
High | No | 3010 | Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -31.854 AMFE: -0.675 GC content %: 47.209 | |
| Taestivum_Traes_5BL_E654B7341.39 Traes_5BL_E654B7341.39 PAC:31759015 |
Low | No | 2964 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -31.339 AMFE: -0.675 GC content %: 46.457 | |
| Taestivum_Traes_5BL_E654B7341.4 Traes_5BL_E654B7341.4 PAC:31758985 |
Low | No | 3137 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -31.814 AMFE: -0.678 GC content %: 46.924 | |
| Taestivum_Traes_5BL_E654B7341.40 Traes_5BL_E654B7341.40 PAC:31759018 |
Low | No | 3088 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -31.661 AMFE: -0.680 GC content %: 46.535 | |
| Taestivum_Traes_5BL_E654B7341.41 Traes_5BL_E654B7341.41 PAC:31759010 |
Low | No | 3206 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -31.803 AMFE: -0.683 GC content %: 46.569 | |
| Taestivum_Traes_5BL_E654B7341.42 Traes_5BL_E654B7341.42 PAC:31759024 |
Low | No | 3325 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -31.699 AMFE: -0.683 GC content %: 46.406 | |
| Taestivum_Traes_5BL_E654B7341.43 Traes_5BL_E654B7341.43 PAC:31759027 |
High | No | 1843 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -33.250 AMFE: -0.654 GC content %: 50.841 | |
| Taestivum_Traes_5BL_E654B7341.5 Traes_5BL_E654B7341.5 PAC:31759001 |
Low | No | 3514 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -31.227 AMFE: -0.688 GC content %: 45.361 | |
| Taestivum_Traes_5BL_E654B7341.6 Traes_5BL_E654B7341.6 PAC:31759011 |
Low | No | 3570 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -31.174 AMFE: -0.688 GC content %: 45.322 | |
| Taestivum_Traes_5BL_E654B7341.7 Traes_5BL_E654B7341.7 PAC:31759013 |
Low | No | 3137 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -31.737 AMFE: -0.685 GC content %: 46.318 | |
| Taestivum_Traes_5BL_E654B7341.8 Traes_5BL_E654B7341.8 PAC:31759023 |
Low | No | 3102 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -31.973 AMFE: -0.681 GC content %: 46.970 | |
| Taestivum_Traes_5BL_E654B7341.9 Traes_5BL_E654B7341.9 PAC:31758997 |
Low | No | 3563 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -31.154 AMFE: -0.690 GC content %: 45.131 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_5BL_E654B7341.16 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.30 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.8 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.11 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.26 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.41 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.21 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.36 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.17 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int | |
| Taestivum_Traes_5BL_E654B7341.31 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia74_I-int |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
